Add initial project structure and files

- Introduced .python-version for Python version management.
- Added AGENTS.md for documentation on agent usage and best practices.
- Created alembic.ini for database migration configurations.
- Implemented main.py as the entry point for the application.
- Established pyproject.toml for project dependencies and configurations.
- Initialized README.md for project overview.
- Generated uv.lock for dependency locking.
- Documented milestones and specifications in docs/milestones.md and docs/spec.md.
- Created logs/status_line.json for logging status information.
- Added initial spike implementations for UI tray hotkeys, audio capture, ASR latency, and encryption validation.
- Set up NoteFlow core structure in src/noteflow with necessary modules and services.
- Developed test suite in tests directory for application, domain, infrastructure, and integration testing.
- Included initial migration scripts in infrastructure/persistence/migrations for database setup.
- Established security protocols in infrastructure/security for key management and encryption.
- Implemented audio infrastructure for capturing and processing audio data.
- Created converters for ASR and ORM in infrastructure/converters.
- Added export functionality for different formats in infrastructure/export.
- Ensured all new files are included in the repository for future development.

pyproject.toml

@@ -0,0 +1,111 @@
+[project]
+name = "noteflow"
+version = "0.1.0"
+description = "Intelligent Meeting Notetaker - Local-first capture + navigable recall + evidence-linked summaries"
+readme = "README.md"
+requires-python = ">=3.12"
+dependencies = [
+    # Core
+    "pydantic>=2.0",
+    # Spike 1: UI + Tray + Hotkeys
+    "flet>=0.21",
+    "pystray>=0.19",
+    "pillow>=10.0",
+    "pynput>=1.7",
+    # Spike 2: Audio
+    "sounddevice>=0.4.6",
+    "numpy>=1.26",
+    # Spike 3: ASR
+    "faster-whisper>=1.0",
+    # Spike 4: Encryption
+    "keyring>=25.0",
+    "cryptography>=42.0",
+    # gRPC Client-Server
+    "grpcio>=1.60",
+    "grpcio-tools>=1.60",
+    "protobuf>=4.25",
+    # Database (async PostgreSQL + pgvector)
+    "sqlalchemy[asyncio]>=2.0",
+    "asyncpg>=0.29",
+    "pgvector>=0.3",
+    "alembic>=1.13",
+    # Settings
+    "pydantic-settings>=2.0",
+    "psutil>=7.1.3",
+]
+
+[project.optional-dependencies]
+dev = [
+    "pytest>=8.0",
+    "pytest-cov>=4.0",
+    "pytest-asyncio>=0.23",
+    "mypy>=1.8",
+    "ruff>=0.3",
+    "basedpyright>=1.18",
+    "testcontainers[postgres]>=4.0",
+]
+
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/noteflow", "spikes"]
+
+[tool.ruff]
+line-length = 100
+target-version = "py312"
+extend-exclude = ["*_pb2.py", "*_pb2_grpc.py", "*_pb2.pyi", ".venv"]
+select = [
+    "E",      # pycodestyle errors
+    "W",      # pycodestyle warnings
+    "F",      # Pyflakes
+    "I",      # isort
+    "B",      # flake8-bugbear
+    "C4",     # flake8-comprehensions
+    "UP",     # pyupgrade
+    "SIM",    # flake8-simplify
+    "RUF",    # Ruff-specific rules
+]
+ignore = [
+    "E501",   # Line length handled by formatter
+]
+
+[tool.ruff.per-file-ignores]
+"**/grpc/service.py" = ["TC002", "TC003"]  # numpy/Iterator used at runtime
+
+[tool.mypy]
+python_version = "3.12"
+strict = true
+warn_return_any = true
+warn_unused_configs = true
+exclude = [".venv"]
+
+[tool.basedpyright]
+pythonVersion = "3.12"
+typeCheckingMode = "standard"
+reportMissingTypeStubs = false
+reportUnknownMemberType = false
+reportUnknownArgumentType = false
+reportUnknownVariableType = false
+reportArgumentType = false  # proto enums accept ints at runtime
+reportIncompatibleVariableOverride = false  # SQLAlchemy __table_args__
+reportAttributeAccessIssue = false  # SQLAlchemy mapped column assignments
+exclude = ["**/proto/*_pb2*.py", "**/proto/*_pb2*.pyi", ".venv"]
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+python_files = ["test_*.py"]
+python_functions = ["test_*"]
+addopts = "-v --tb=short"
+asyncio_mode = "auto"
+asyncio_default_fixture_loop_scope = "function"
+markers = [
+    "slow: marks tests as slow (model loading)",
+    "integration: marks tests requiring external services",
+]
+
+[dependency-groups]
+dev = [
+    "ruff>=0.14.9",
+]